PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G03170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 290aa    MW: 30844.4 Da    PI: 6.9235
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G03170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.12e-41181492128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +pGfrF Pt+eel+ +yL+++++g++ ++e+vi+ vd+y ++P++L +    + + ++++w+fF++r++++ +g r+ r+t sgyWkatg+   
  OGLUM11G03170.1  18 TPGFRFYPTEEELLGFYLRHRLAGTRPDVERVIPVVDVYGYHPSQLAAvageASARDTEQWFFFCPRAERELHGGRPARTTPSGYWKATGSPSC 111
                      69***************************99***************84455333335569*******************************999 PP

              NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v+s+ +++++g+k+t+vfy+grap+g+kt+W m+ey++
  OGLUM11G03170.1 112 VISSaTNRVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 149
                      998868889***************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-4516176IPR003441NAC domain
PROSITE profilePS5100546.47717177IPR003441NAC domain
PfamPF023659.1E-2319148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MATTRSGGGG AISDPFATPG FRFYPTEEEL LGFYLRHRLA GTRPDVERVI PVVDVYGYHP  60
SQLAAVAGEA SARDTEQWFF FCPRAERELH GGRPARTTPS GYWKATGSPS CVISSATNRV  120
IGVKRTMVFY QGRAPTGTKT RWKMNEYKAV ADDAAMLHPM APPRLRNELG VCRVYISTGT  180
LRSFDRRPLD NQAAPTQQQV MPSLTAAAAV NTNLAGAGAG AGVVFAGAQG DSSRDCSSSS  240
GSRELAGGAD GSEDDAIDWN SLISSATADD LGFNTVVGFD PSIVGSWPQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-281917519163NO APICAL MERISTEM PROTEIN
1ut4_B2e-281917519163NO APICAL MERISTEM PROTEIN
1ut7_A2e-281917519163NO APICAL MERISTEM PROTEIN
1ut7_B2e-281917519163NO APICAL MERISTEM PROTEIN
3swm_A1e-281917522166NAC domain-containing protein 19
3swm_B1e-281917522166NAC domain-containing protein 19
3swm_C1e-281917522166NAC domain-containing protein 19
3swm_D1e-281917522166NAC domain-containing protein 19
3swp_A1e-281917522166NAC domain-containing protein 19
3swp_B1e-281917522166NAC domain-containing protein 19
3swp_C1e-281917522166NAC domain-containing protein 19
3swp_D1e-281917522166NAC domain-containing protein 19
4dul_A2e-281917519163NAC domain-containing protein 19
4dul_B2e-281917519163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099390.0AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615861.11e-179PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR31e-66NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0E0BFG70.0A0A0E0BFG7_9ORYZ; Uncharacterized protein
STRINGBGIOSGA034823-PA1e-180(Oryza sativa Indica Group)
STRINGORGLA11G0032800.11e-180(Oryza glaberrima)
STRINGORGLA12G0180300.11e-180(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-67NAC domain containing protein 90